| http://dbpedia.org/ontology/abstract
|
Patch-sequencing (patch-seq) is a method d … Patch-sequencing (patch-seq) is a method designed for tackling specific problems involved in characterizing neurons. As neural tissues are one of the most transcriptomically diverse populations of cells, classifying neurons into cell types in order to understand the circuits they form is a major challenge for neuroscientists. Combining classical classification methods with single cell RNA-sequencing post-hoc has proved to be difficult and slow. By combining multiple data modalities such as electrophysiology, sequencing and microscopy, Patch-seq allows for neurons to be characterized in multiple ways simultaneously. It currently suffers from low throughput relative to other sequencing methods mainly due to the manual labor involved in achieving a successful patch-clamp recording on a neuron. Investigations are currently underway to automate patch-clamp technology which will improve the throughput of patch-seq as well.prove the throughput of patch-seq as well.
|
| http://dbpedia.org/ontology/thumbnail
|
http://commons.wikimedia.org/wiki/Special:FilePath/Patch-Seq_Methodology.png?width=300 +
|
| http://dbpedia.org/ontology/wikiPageExternalLink
|
http://syntheticneurobiology.org/PDFs/19.07.suk.pdf +
, https://www.jneurosci.org/content/41/5/937.abstract +
, https://www.frontiersin.org/articles/10.3389/fnmol.2018.00363/full +
|
| http://dbpedia.org/ontology/wikiPageID
|
66692692
|
| http://dbpedia.org/ontology/wikiPageLength
|
54240
|
| http://dbpedia.org/ontology/wikiPageRevisionID
|
1095740811
|
| http://dbpedia.org/ontology/wikiPageWikiLink
|
http://dbpedia.org/resource/Epigenetics +
, http://dbpedia.org/resource/Ligand +
, http://dbpedia.org/resource/Histone_acetylation_and_deacetylation +
, http://dbpedia.org/resource/DNA_methylation +
, http://dbpedia.org/resource/Axon +
, http://dbpedia.org/resource/Multi-electrode_array +
, http://dbpedia.org/resource/T-distributed_stochastic_neighbor_embedding +
, http://dbpedia.org/resource/Dendrite +
, http://dbpedia.org/resource/Ohm +
, http://dbpedia.org/resource/Cell_type +
, http://dbpedia.org/resource/Neural_correlates_of_consciousness +
, http://dbpedia.org/resource/Postsynaptic_potential +
, http://dbpedia.org/resource/Autoencoder +
, http://dbpedia.org/resource/List_of_single_cell_omics_methods +
, http://dbpedia.org/resource/Rhodamine +
, http://dbpedia.org/resource/Category:Electrophysiology +
, http://dbpedia.org/resource/Category:RNA_sequencing +
, http://dbpedia.org/resource/Induced_pluripotent_stem_cell +
, http://dbpedia.org/resource/Neurotransmitter +
, http://dbpedia.org/resource/Voltage-gated_calcium_channel +
, http://dbpedia.org/resource/Voltage_clamp +
, http://dbpedia.org/resource/Computer_vision +
, http://dbpedia.org/resource/File:Patch_Clamp_Resistance_Animation.gif +
, http://dbpedia.org/resource/Transcription_%28biology%29 +
, http://dbpedia.org/resource/Threshold_potential +
, http://dbpedia.org/resource/Resting_potential +
, http://dbpedia.org/resource/Single-cell_RNA-sequencing +
, http://dbpedia.org/resource/Conformational_change +
, http://dbpedia.org/resource/Cell_culture +
, http://dbpedia.org/resource/Action_potential +
, http://dbpedia.org/resource/CRISPR +
, http://dbpedia.org/resource/Voltage-gated_ion_channel +
, http://dbpedia.org/resource/Automated_patch_clamp +
, http://dbpedia.org/resource/Channelopathy +
, http://dbpedia.org/resource/ChIP_sequencing +
, http://dbpedia.org/resource/Primary_visual_cortex +
, http://dbpedia.org/resource/Flow_cytometry +
, http://dbpedia.org/resource/Single_cell_sequencing +
, http://dbpedia.org/resource/Optogenetics +
, http://dbpedia.org/resource/Biotin +
, http://dbpedia.org/resource/Soma_%28biology%29 +
, http://dbpedia.org/resource/Feature_vector +
, http://dbpedia.org/resource/Cell_%28biology%29 +
, http://dbpedia.org/resource/Neuronal_tracing +
, http://dbpedia.org/resource/Microscopy +
, http://dbpedia.org/resource/Connectomics +
, http://dbpedia.org/resource/Electrical_resistance_and_conductance +
, http://dbpedia.org/resource/Neuromorphology +
, http://dbpedia.org/resource/MAP-Seq +
, http://dbpedia.org/resource/RNA-Seq +
, http://dbpedia.org/resource/Resting_membrane_potential +
, http://dbpedia.org/resource/Slice_preparation +
, http://dbpedia.org/resource/Compartmental_neuron_models +
, http://dbpedia.org/resource/Patch_clamp +
, http://dbpedia.org/resource/Electrophysiology +
, http://dbpedia.org/resource/Neural_network +
, http://dbpedia.org/resource/Ion_channel +
, http://dbpedia.org/resource/Methylated_DNA_immunoprecipitation +
, http://dbpedia.org/resource/Sodium_channel +
, http://dbpedia.org/resource/Uniform_Manifold_Approximation_and_Projection +
, http://dbpedia.org/resource/File:Patch-Seq_data_in_machine_learning.png +
, http://dbpedia.org/resource/File:Cortical_microcircuit.png +
, http://dbpedia.org/resource/File:Patch-Seq_Methodology.png +
, http://dbpedia.org/resource/Neuron +
, http://dbpedia.org/resource/Neuroanatomical_atlas +
, http://dbpedia.org/resource/Neurotransmitter_receptor +
, http://dbpedia.org/resource/Proteomics +
, http://dbpedia.org/resource/Omics +
, http://dbpedia.org/resource/GCaMP +
, http://dbpedia.org/resource/Potassium_channel +
, http://dbpedia.org/resource/Pipette +
, http://dbpedia.org/resource/Machine_learning +
, http://dbpedia.org/resource/Synapse +
|
| http://dbpedia.org/property/wikiPageUsesTemplate
|
http://dbpedia.org/resource/Template:Reflist +
|
| http://purl.org/dc/terms/subject
|
http://dbpedia.org/resource/Category:Electrophysiology +
, http://dbpedia.org/resource/Category:RNA_sequencing +
|
| http://www.w3.org/ns/prov#wasDerivedFrom
|
http://en.wikipedia.org/wiki/Patch-sequencing?oldid=1095740811&ns=0 +
|
| http://xmlns.com/foaf/0.1/depiction
|
http://commons.wikimedia.org/wiki/Special:FilePath/Patch_Clamp_Resistance_Animation.gif +
, http://commons.wikimedia.org/wiki/Special:FilePath/Patch-Seq_Methodology.png +
, http://commons.wikimedia.org/wiki/Special:FilePath/Patch-Seq_data_in_machine_learning.png +
, http://commons.wikimedia.org/wiki/Special:FilePath/Cortical_microcircuit.png +
|
| http://xmlns.com/foaf/0.1/isPrimaryTopicOf
|
http://en.wikipedia.org/wiki/Patch-sequencing +
|
| owl:sameAs |
http://www.wikidata.org/entity/Q107473737 +
, https://global.dbpedia.org/id/FmFrK +
, http://dbpedia.org/resource/Patch-sequencing +
|
| rdfs:comment |
Patch-sequencing (patch-seq) is a method d … Patch-sequencing (patch-seq) is a method designed for tackling specific problems involved in characterizing neurons. As neural tissues are one of the most transcriptomically diverse populations of cells, classifying neurons into cell types in order to understand the circuits they form is a major challenge for neuroscientists. Combining classical classification methods with single cell RNA-sequencing post-hoc has proved to be difficult and slow. By combining multiple data modalities such as electrophysiology, sequencing and microscopy, Patch-seq allows for neurons to be characterized in multiple ways simultaneously. It currently suffers from low throughput relative to other sequencing methods mainly due to the manual labor involved in achieving a successful patch-clamp recording on a neuronccessful patch-clamp recording on a neuron
|
| rdfs:label |
Patch-sequencing
|
