| http://dbpedia.org/ontology/abstract
|
Metabolomic Pathway Analysis, shortened to … Metabolomic Pathway Analysis, shortened to MetPA, is a freely available, user-friendly web server to assist with the identification analysis and visualization of metabolic pathways using metabolomic data. MetPA makes use of advances originally developed for pathway analysis in microarray experiments and applies those principles and concepts to the analysis of metabolic pathways. For input, MetPA expects either a list of compound names (identified as statistically significant or significant perturbed) or a metabolite concentration table with phenotypic labels (i.e. sick vs. healthy). The list of compounds can include common names, HMDB IDs or KEGG IDs with one compound per row. Compound concentration tables must have samples in rows and compounds in columns. MetPA’s output is a series of tables indicating which pathways are significantly enriched (along with accompanying statistics) as well as a variety of graphs or pathway maps illustrating where and how certain pathways were enriched. MetPA’s graphical output uses a colorful Google-Maps visualization system that allows simple, intuitive data exploration that lets users employ a computer mouse or track pad to select, drag and place images and to seamlessly zoom in and out. Users can explore MetPA’s output using three different views or levels: 1) a metabolome view; 2) a pathway view; 3) a compound view.ew; 2) a pathway view; 3) a compound view.
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| http://dbpedia.org/ontology/title
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Metabolomic Pathway Analysis
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http://metpa.metabolomics.ca +
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6942
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1062723979
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http://dbpedia.org/resource/Human_Metabolome_Database +
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, http://dbpedia.org/resource/David_S._Wishart +
, http://dbpedia.org/resource/Metabolite_Set_Enrichment_Analysis +
, http://dbpedia.org/resource/Topological_data_analysis +
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, http://dbpedia.org/resource/Metabolic_pathway +
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, http://dbpedia.org/resource/Microarray +
, http://dbpedia.org/resource/Metabolome +
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| http://dbpedia.org/property/center
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University of Alberta
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| http://dbpedia.org/property/curation
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Manually curated
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| http://dbpedia.org/property/description
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For metabolomic data analysis – specifically for the identification of enriched or important pathways from multiple different organisms
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| http://dbpedia.org/property/format
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Data Input: Tables of metabolite names and/or concentrations; Data Output: Graphs and tables with embedded hyperlinks
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-6.31152E7
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| http://dbpedia.org/property/laboratory
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http://dbpedia.org/resource/David_S._Wishart +
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| http://dbpedia.org/property/title
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Metabolomic Pathway Analysis
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http://metpa.metabolomics.ca +
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For metabolomic data analysis – specifically for the identification of enriched or important pathways from multiple different organisms
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http://dbpedia.org/resource/Category:Biological_databases +
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http://en.wikipedia.org/wiki/Metabolomic_Pathway_Analysis?oldid=1062723979&ns=0 +
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http://metpa.metabolomics.ca +
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http://en.wikipedia.org/wiki/Metabolomic_Pathway_Analysis +
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| rdfs:comment |
Metabolomic Pathway Analysis, shortened to … Metabolomic Pathway Analysis, shortened to MetPA, is a freely available, user-friendly web server to assist with the identification analysis and visualization of metabolic pathways using metabolomic data. MetPA makes use of advances originally developed for pathway analysis in microarray experiments and applies those principles and concepts to the analysis of metabolic pathways. For input, MetPA expects either a list of compound names (identified as statistically significant or significant perturbed) or a metabolite concentration table with phenotypic labels (i.e. sick vs. healthy). The list of compounds can include common names, HMDB IDs or KEGG IDs with one compound per row. Compound concentration tables must have samples in rows and compounds in columns. MetPA’s output is a series of ta columns. MetPA’s output is a series of ta
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| rdfs:label |
Metabolomic Pathway Analysis
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