| http://dbpedia.org/ontology/abstract
|
In bioinformatics, a Gene Disease Database … In bioinformatics, a Gene Disease Database is a systematized collection of data, typically structured to model aspects of reality, in a way to comprehend the underlying mechanisms of complex diseases, by understanding multiple composite interactions between phenotype-genotype relationships and gene-disease mechanisms. Gene Disease Databases integrate human gene-disease associations from various expert curated databases and text mining derived associations including Mendelian, complex and environmental diseases.elian, complex and environmental diseases.
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|
http://commons.wikimedia.org/wiki/Special:FilePath/Geneprioritizationworkflow.jpg?width=300 +
|
| http://dbpedia.org/ontology/title
|
RGD
, DisGeNET
, UniProt
, The Online Mendelian Inheritance in Man
, The Ensembl genome database project.
|
| http://dbpedia.org/ontology/wikiPageExternalLink
|
http://www.ensembl.org/ +
, http://www.disgenet.org/ +
, http://rgd.mcw.edu/ +
, https://www.ncbi.nlm.nih.gov/omim +
, ftp://rgd.mcw.edu/pub/data_release/ +
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|
44248347
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|
40204
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|
1112428472
|
| http://dbpedia.org/ontology/wikiPageWikiLink
|
http://dbpedia.org/resource/Genotype +
, http://dbpedia.org/resource/OMIM +
, http://dbpedia.org/resource/Human_Genome_Project +
, http://dbpedia.org/resource/Bioinformatics_companies +
, http://dbpedia.org/resource/Computational_biomodeling +
, http://dbpedia.org/resource/Disease_cluster +
, http://dbpedia.org/resource/List_of_open-source_bioinformatics_software +
, http://dbpedia.org/resource/List_of_bioinformatics_journals +
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, http://dbpedia.org/resource/Integrative_bioinformatics +
, http://dbpedia.org/resource/Health_informatics +
, http://dbpedia.org/resource/Java_%28programming_language%29 +
, http://dbpedia.org/resource/List_of_biological_databases +
, http://dbpedia.org/resource/Computational_genomics +
, http://dbpedia.org/resource/Biodiversity_informatics +
, http://dbpedia.org/resource/Genome-wide_association_study +
, http://dbpedia.org/resource/Mutations +
, http://dbpedia.org/resource/BLAST +
, http://dbpedia.org/resource/European_Bioinformatics_Institute +
, http://dbpedia.org/resource/API +
, http://dbpedia.org/resource/Jumping_library +
, http://dbpedia.org/resource/General_feature_format +
, http://dbpedia.org/resource/Carcinoma +
, http://dbpedia.org/resource/Swiss_Institute_of_Bioinformatics +
, http://dbpedia.org/resource/Genome +
, http://dbpedia.org/resource/Clustal +
, http://dbpedia.org/resource/Rat_Genome_Database +
, http://dbpedia.org/resource/Human_Molecular_and_Genetics_Center +
, http://dbpedia.org/resource/Molecular_biology +
, http://dbpedia.org/resource/File:Relationships_in_Gene_Diseases.jpg +
, http://dbpedia.org/resource/Text_mining +
, http://dbpedia.org/resource/Comparative_Toxicogenomics_Database +
, http://dbpedia.org/resource/File:Databasecompilation1.png +
, http://dbpedia.org/resource/File:Pathwayhomogeneity1.png +
, http://dbpedia.org/resource/File:Disgenet.png +
, http://dbpedia.org/resource/File:Geneprioritizationworkflow.jpg +
, http://dbpedia.org/resource/FASTA +
, http://dbpedia.org/resource/Ensembl +
, http://dbpedia.org/resource/Disease_gene_identification +
, http://dbpedia.org/resource/DisGeNET +
, http://dbpedia.org/resource/International_Society_for_Computational_Biology +
, http://dbpedia.org/resource/Computational_biology +
, http://dbpedia.org/resource/Protein_Information_Resource +
, http://dbpedia.org/resource/Databases +
, http://dbpedia.org/resource/Category:Genetics_databases +
, http://dbpedia.org/resource/SNPs +
, http://dbpedia.org/resource/Biomedicine +
, http://dbpedia.org/resource/Phylogenetics +
, http://dbpedia.org/resource/Structural_bioinformatics +
, http://dbpedia.org/resource/Medical_College_of_Wisconsin +
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, http://dbpedia.org/resource/DNA +
, http://dbpedia.org/resource/Creative_Commons +
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, http://dbpedia.org/resource/Functional_genomics +
, http://dbpedia.org/resource/National_Center_for_Biotechnology_Information +
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, http://dbpedia.org/resource/Bioinformatics +
, http://dbpedia.org/resource/REST +
, http://dbpedia.org/resource/Wellcome_Trust_Sanger_Institute +
|
| http://dbpedia.org/property/author
|
Ferran Sanz and Laura I. Furlong
, Mary E. Shimoyama, PhD; Howard J. Jacob, PhD
|
| http://dbpedia.org/property/bookmark
|
Yes – both individual protein entries and searches
|
| http://dbpedia.org/property/center
|
http://dbpedia.org/resource/Wellcome_Trust_Sanger_Institute +
, http://dbpedia.org/resource/European_Bioinformatics_Institute +
, http://dbpedia.org/resource/Medical_College_of_Wisconsin +
, http://dbpedia.org/resource/National_Center_for_Biotechnology_Information +
, Research Programme on Biomedical Informatics IMIM-UPF
, EMBL-EBI, UK; SIB, Switzerland; PIR, US.
|
| http://dbpedia.org/property/citation
|
Hubbard, et al.
, Ongoing and future developments at the Universal Protein Resource
|
| http://dbpedia.org/property/curation
|
Yes – manual and automatic. Rules for automatic annotation generated by database curators and computational algorithms.
|
| http://dbpedia.org/property/data
|
http://dbpedia.org/resource/Databases +
, http://dbpedia.org/resource/Bioinformatics +
, http://dbpedia.org/resource/List_of_biological_databases +
, Gene-Disease
|
| http://dbpedia.org/property/description
|
UniProt is the universal protein resource, a central repository of protein data created by combining the Swiss-Prot, TrEMBL and PIR-PSD databases.
, Ensembl
, The Rat Genome Database
, OMIM is a compendium of human genes and genetic phenotypes.
, Integrates human gene-disease associations
|
| http://dbpedia.org/property/download
|
ftp://rgd.mcw.edu/pub/data_release/ +
, & for downloading complete data sets
|
| http://dbpedia.org/property/format
|
Custom flat file, FASTA, GFF, RDF, XML.
|
| http://dbpedia.org/property/frequency
|
4
, annual
|
| http://dbpedia.org/property/label
|
Subtype of Databases
, Type of Databases
, Subclassification
, Classification
|
| http://dbpedia.org/property/laboratory
|
http://dbpedia.org/resource/Human_Molecular_and_Genetics_Center +
, Integrative Biomedical Informatics Group
|
| http://dbpedia.org/property/license
|
Creative Commons Attribution-NoDerivs
|
| http://dbpedia.org/property/logo
|
300
|
| http://dbpedia.org/property/organism
|
All
, Rattus norvegicus
, Human
|
| http://dbpedia.org/property/pmid
|
25877637
, 25398906
, 25355511
|
| http://dbpedia.org/property/scope
|
Protein annotation
, Associations Database
|
| http://dbpedia.org/property/title
|
The Online Mendelian Inheritance in Man
, The Ensembl genome database project.
, RGD
, DisGeNET
, Gene Disease Database
, UniProt
|
| http://dbpedia.org/property/url
|
http://www.disgenet.org/ +
, http://rgd.mcw.edu/ +
, http://www.ensembl.org/ +
, https://www.ncbi.nlm.nih.gov/omim +
|
| http://dbpedia.org/property/version
|
3
|
| http://dbpedia.org/property/versioning
|
Yes
|
| http://dbpedia.org/property/webapp
|
Advanced search, BLAST, ClustalO, bulk retrieval/download, ID mapping
|
| http://dbpedia.org/property/webservice
|
Yes – JAVA API see info & REST see info
|
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|
http://dbpedia.org/resource/Template:Portal +
, http://dbpedia.org/resource/Template:Broader +
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, http://dbpedia.org/resource/Template:Reflist +
, http://dbpedia.org/resource/Template:Infobox_biodatabase +
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, http://dbpedia.org/resource/Template:URL +
, http://dbpedia.org/resource/Template:Infobox +
, http://dbpedia.org/resource/Template:Cite_journal +
|
| http://purl.org/dc/elements/1.1/description
|
OMIM is a compendium of human genes and genetic phenotypes.
, Integrates human gene-disease associations
, The Rat Genome Database
, UniProt is the universal protein resource, a central repository ofproteindata created by combining the Swiss-Prot, TrEMBL and PIR-PSDdatabases.
, Ensembl
|
| http://purl.org/dc/terms/subject
|
http://dbpedia.org/resource/Category:Genetics_databases +
|
| http://purl.org/linguistics/gold/hypernym
|
http://dbpedia.org/resource/Collection +
|
| http://www.w3.org/ns/prov#wasDerivedFrom
|
http://en.wikipedia.org/wiki/Gene_Disease_Database?oldid=1112428472&ns=0 +
|
| http://xmlns.com/foaf/0.1/depiction
|
http://commons.wikimedia.org/wiki/Special:FilePath/Pathwayhomogeneity1.png +
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, http://commons.wikimedia.org/wiki/Special:FilePath/Geneprioritizationworkflow.jpg +
, http://commons.wikimedia.org/wiki/Special:FilePath/Relationships_in_Gene_Diseases.jpg +
, http://commons.wikimedia.org/wiki/Special:FilePath/Databasecompilation1.png +
, http://commons.wikimedia.org/wiki/Special:FilePath/Disgenet.png +
|
| http://xmlns.com/foaf/0.1/homepage
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http://www.disgenet.org/ +
, http://www.ensembl.org/ +
, http://rgd.mcw.edu/ +
, https://www.ncbi.nlm.nih.gov/omim +
|
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|
http://en.wikipedia.org/wiki/Gene_Disease_Database +
|
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http://rdf.freebase.com/ns/m.01265lpb +
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, http://dbpedia.org/resource/Gene_Disease_Database +
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http://dbpedia.org/ontology/Book +
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|
| rdfs:comment |
In bioinformatics, a Gene Disease Database … In bioinformatics, a Gene Disease Database is a systematized collection of data, typically structured to model aspects of reality, in a way to comprehend the underlying mechanisms of complex diseases, by understanding multiple composite interactions between phenotype-genotype relationships and gene-disease mechanisms. Gene Disease Databases integrate human gene-disease associations from various expert curated databases and text mining derived associations including Mendelian, complex and environmental diseases.elian, complex and environmental diseases.
|
| rdfs:label |
Gene Disease Database
|
